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[TOP] Download 025 122 Rar
The human (hg17, May 2004) and mouse (mm6, March 2005) reference sequence chromosomes from the UCSC Genome Browser database [47, 48] were scanned for RGKTCA motifs separated by 1 to 5 bp (DR1-DR5) using a previously described program perl program [11, 12]. The RefSeq Genes track [49], downloaded September 21 2005, was used to identify the DR2 located -10 to +10 kb of gene 5'-ends. A custom SQL program used the chromosomal location of Alu sequences from the RepeatMasker track [50] to identify included DR1-DR5. The same program used the chromosomal location of regions bound by RARα from the ENCODE Affy Sites track to identify DR2 elements within these regions. Another SQL program was used to identify the DR2 in AluY that are not included within Human/Chimp (hg17 vs panTro1) and Human/Rhesus (hg17 vs rheMac2) pairwise BLASTZ alignment [51]. The χ2 test to compare the distribution of Alu-DR2 to Alu repeat was carried out with the chisq.test function of the R statistical computing environment [52]. The cladogram of AluSg subfamilies was generated with PHYLIP 3.6 [53] using the consensus of AluS families from Repbase [54] and AluS subfamilies with RARE DR2 in their consensus from Price et al [26]. All programs were run on the bioinformatics cluster of The Quebec Bioinformatics Network (BioneQ) and are available upon request.
Download 025 122 rar
The files are all packaged with PKZIP and are in EBCDIC so you download from here,unzip, upload as Binary (No EBCDICto ASCII translation) toyour mainframe to an FB80 data set. The firstfew filesare sequential files are suffixed .DATA and are ready to use after being uploaded (again as Binary). PDSdata sets and some sequential files are suffixed .XMI and are in XMIT format so you will need to do a TSO commandRECEIVE INDATASET(???) where ??? is the file you upload to transform it back to usablePDS or PS file. You will need a utility to unzip (decompress) the .ZIP files and I suggesteither 7-Zip (free) , WinZip, or RAR.
File 1 on both the CBT and Overflow (COV) is a complete index and guide to what ison the tape so if you do not already have file 1 for the current version of the tape youwill probably want to download it first. It is available below in several formats soyou can use the one that is most convenient. 041b061a72